Neurochemistry Reflections

For those of you who can’t read 0.2 size font, the molecule shown in the featured picture is oxytocin. Eh? Eh? Get it?
Anyway, this course truly was everything I wanted and more. Unlike many of my classmates, I took Neurochemistry as basically the only elective I will be able to take in my undergraduate career. (Filling requirements for a chemistry major, a math major, and all the liberal arts core classes that a Concordia degree requires takes quite a bit of time to complete without overloading or going insane.) Actually, during my sophomore and junior years I considered dropping my math major to pursue more coursework in neuroscience, thinking that ultimately I’d go to graduate school for neurochemistry. Thus, discovering that the neurochemistry class offered here fit into my schedule my senior year, I was pretty darn ecstatic. However, I noticed that the class did not have a lab associated with it which was different from any science class I had taken, so I was a bit wary of what would be in store, especially since it was attributed as a senior capstone class. Capstone classes are, by definition, writing-heavy classes, and writing papers is not one of my favorite things to do, to put it lightly.

I want a word that means frustrated but none of the synonyms suggested by Word are the one I’m thinking of. WHAT IS IT??…. Oh. I guess “frustrated” works.

Despite my pre-semester concerns, however, this class turned out to be not only enjoyable, but extremely useful as well. I think that one of the weaknesses of the chemistry classes I have taken thus far is that they don’t take much time to connect the course material with what is actually happening in the field. Granted, most just don’t have the time to do this due to the tremendous amount of material that needs to be covered in a short time, but it is still very important to those that are going to do research at any time in their chemistry careers. From my summer undergraduate research program, I have discovered that reading these sorts of articles comprises an almost unbelievable portion of one’s time spent in research. A person needs to gather foundational information on the material and instrumentation to develop a method for their project, make sure that someone hasn’t already done the same experiment, and in some cases search literature for an initial topic that is important to the scientific community. This course not only encouraged reading scientific articles and reviews, but the required reading was solely these articles. Scientific journals are a very different form of writing than most prose, and in order to read them fairly quickly and effectively, a person needs practice. With our weekly journal articles, we both gained familiarity with this style and learned how best to go about dealing with the information presented. Each week we worked together to understand the overall message of the article, determine what was important and what was trivial, and communicate our findings with the non-science world. This last portion is the reason for this blog series, and definitely an important step in the research process; although it’s necessary to effectively communicate with the rest of the scientific community, it’s extremely important to share our progress with the rest of society to gain support and feedback to continue or reevaluate different aspects of a project. Working within a fairly specific group of probably like-minded people, one’s perspective can easily become skewed; communication with other groups helps to ground oneself.
I still think this is a good idea…

This class has been so beneficial to me that I would suggest that it become part of the required curriculum for an ACS Chemistry major. For a person going into research, learning how to process information from scientific journals is a necessity and something that isn’t really done in any other chemistry class. Peer discussion on research was also emphasized, which is unlike other courses, yet essential to most jobs in the field. This course has, in short, most strongly conveyed the link from my undergraduate studies to skill application in the field than any other course I’ve taken. I recommend it to any and all science majors. It’s fantastic.

The Chemical Roots that Drive Obesity

It shouldn’t come as a surprise to hear that obesity is one of the most prevalent medical concerns in the United States. In fact, 30% of the US population has obesity and 30% of these individuals also has diabetes. Our society is a point where the number of cases of type 1 diabetes in young people under the age of 18 is increasing. In order to combat this rise in obesity and diabetes regulations have been placed on fast food businesses, requirements such as food nutrition labels have been implemented, and grassroots campaigns against chemicals such as Red Dye and High Fructose Corn Syrup have sprung up around the country. These regulations have been put in place as an attempt to curb people’s eating habits and make them aware of just what they are eating. However, the issue of obesity and diabetes may not stem solely from society’s increased consumption of food. In order to understand the cause of these issues we must delve into the brain and observe the interactions of two chemicals: Leptin and Insulin.
 
While insulin is a term you’ve probably heard about, you may be unfamiliar with leptin. First, a brief summary of insulin. Insulin is a peptide hormone which regulates the amount of glucose taken in by cells throughout the body. Within the brain, insulin controls glucose intake by neurons, regulates acetylcholine, and contributes to memory function (http://www.hbo.com/alzheimers/science-insulin-in-the-brain.html). Similarly leptin is also a peptide hormone. Leptin is an important regulator of food intake (appetite) and body weight. In the brain leptin and insulin receptors are primarily found within the hypothalamus in a region known as the hypothalamic arcuate nucleus. Chemicals such as neuropeptide Y (NPY), agouti related protein (AgRP), and proopiomelanocortin (POMC), which are released based on leptin and insulin concentrations, cause the neurons in this region to be known as appetite-regulating neurons. When concentrations of insulin and leptin are high, POMC is released which reduces food intake and when concentration are low, NPY and AgRP stimulate food intake.
 
It might be helpful to know some of the Biochemistry of leptin signaling. Leptin stimulates cytokine receptors, which activate the JAK/STAT pathway towards gene expression. JAK, janus kinase, is a protein bound to the cytokine receptor, which upon stimulation of the receptor becomes phosphorylated. The phosphorylated JAK then creates a bind site for STAT (signal transducers and activators of transcription) molecules. STAT then enters the cell nucleus where it transcribes DNA for gene expression.
 
Now that some of the Biochemistry is out of the way, it is important to discuss how levels of leptin contribute to the rising levels of obesity in the US population. People with obesity have a flood of leptin in their system so the cytokine receptors become resistant to the overabundant leptin. This means that the appetite controlling chemical POMC is not produced because the neurons are not receiving leptin. Therefore, the signal stop food intake in never activated. On the other side of the metabolic disorder spectrum, people with anorexia have high levels of leptin without receptor resistance, thereby expressing POMC and preventing craving for food intake. Therefore, dyregulation and imbalance in leptin levels in the brain can cause various metabolic disorders such as obesity.

A Reflection on the Semester

It’s hard to believe that it’s over. I’m not going to lie, I was nervous about this class knowing that it was going to be a good deal of biology, despite the neurochemistry name. Proteins, receptors, lipids, synapses…. As we say up here in Minnesota, ‘Ufda!’ I feel that I’ve grown in a lot of ways over the past semester.
The idea of a paper a week was very intimidating at first, but a 15 page scientific article no longer fills me with dread and foreboding (the last five pages are usually references anyway!) and my knowledge about the brain and how it works has definitely increased, although there wasn’t a lot there before, at least not a very in depth knowledge. I really appreciated coming together on Monday to a safe place and accumulate the things in the article that we did not understand. It made me feel less alone in the strenuous process of trying to get a basic idea of what the paper was talking about and gives a great method for getting deeper knowledge out of any paper that you read. Wednesday, or information day, when we all come together to give synopsis of the extra information dug up on subjects we didn’t fully understand always went quickly, but it was nice that if there was something that I missed it was on the wiki to be reexamined at a later time.
I think that Fridays were out “BREW” days (BREW is Concordia College’s motto ‘Becoming Responsibly Engaged in the World’). It was interesting to see everyone’s perspective on the subject as a health issue and how it relates to social issues, not just the pure science of it. More than that, it allowed us to reflect on science and its impact on society as a whole and moral dilemmas that occur within the scientific community.

On the whole, I have taken some new skills and improved other skills through this capstone experience. I have become better at reading and deciphering information from scientific papers as well as presenting that information in a relatable manner, both through the Wednesday information sharing sessions and through the blog posts. They say that being able to teach information is the best way to cement it in your own mind, and I cannot agree more. I think that this experience with scientific papers will help my own writing, better knowing what is expected in published papers. All in all, this class has been a good experience for me and I really appreciate the change in pace from so many other science classes that I have taken in the past.

My Capstone Experience

To be honest, I took the class because it fulfilled my senior credits, capstone requirement, and elective course for my chemistry major. In the beginning of the semester, I thought this course would be an advanced biochemistry class with intense focus into neurochemical pathways. However, it turned out not to be the case. Instead of just throwing whole bunch neurotransmitters and the pathways to us, Dr. Mach taught the course in a much different way, a way that’s totally new to me.
Each week, we are required to read the “paper of the week” over the weekend, discuss the questions we have in class, and each of us gets to choose a specific topic to research on every Monday. On Wednesdays, we’d share the information we gather with the entire class including Dr. Mach. And on Fridays, the discussion leaders take over the class, host discussions on the topic of the paper and make connections between academic with the real world problems. After the discussions, we are required to write up a blog post online on our class blog. At first, I was not used to this discussion-based lecture style, but as the curse goes on, I realized the benefits of it. This type of teaching allows me to not only acquire the knowledge that normal lecture could provide, but also improve my research method, and ability to analyze scientific articles. Although blogging and creating a wiki were not the form of assignments I was used to (I’m not a blogging type of person as you have read), the fascinating topics really sparked my interest and making these assignments more than enjoyable.
The capstone course is an opportunity for us to demonstrate that we have achieved the goals for learning established by our undergraduate education. As a chemistry major student, this class allows me to apply what I have learned in the past 3 years to some of the most advanced researches. It also promotes the theme of Concordia’s core curriculum, “BREW”, Becoming Responsibly Engaged in the World. After all, although biochemistry is not my focus, I really enjoyed this class and hopefully I’ll be able to apply the skills I gained from this experience to BREW.

Neurochemistry In My Future

I’m going to be honest and say I took this class because it fulfilled two requirements for graduation. As a chemistry class, it has served as my elective course for my chemistry major. As a capstone class, it has served as my required core capstone for graduation. I also thought it would fit nicely as a bridge between my psychology minor and chemistry major.
 
Little did I know the things we learned would apply to my daily life and to my future career plans. I have noticed over the course of the semester being far more interested in what is going on with different diseases and disorders rather than simply how to treat them. I think that this interest gives a better understanding overall of diseases and disorders as how they are treated is often based on what is going on. This is helpful in diseases which do not only affect the brain.
 
As for how this class applied to future career plans, I have stated in previous blogs my desire to be a teacher. I am currently applying to graduate schools for pursue a Master’s in Education and wish to teach high school chemistry. Many of the disorders we talked about had some sort of relevance to teaching adolescents. Whether it is the knowledge of things like autism and concussions which have obvious relations or things like bipolar and depression which are often diagnosed in adolescent years.
 
Another thing that is an invisible take home message is the process which we used to evaluate and learn about each topic. Starting with a published research paper can be very scary. Even as a senior in college who has researched using countless published papers, it is still a daunting task to weed through all the ‘chemistry jargon’ and get to what the authors are trying to explain. Instead of being expected to understand the paper on our own we worked together to create a list of things from the paper which we did not understand or wanted more information about. I really liked this approach as it broke what often was an eight to fifteen page paper up into a simple list of things. The list was then researched further and presented to the class. To further understanding, we ended each topic with a class discussion. Discussion was great as it did not focus on just the chemistry but also on the ethics and real world applications of the different diseases and disorders.
 
This approach to learning is something I would like to use when I start to teach. I think it would be helpful to use relevant articles to supplement chemistry curriculum in high school and to introduce high school students to real world applications of the topics being discussed.
 
Overall, I am very glad that Neurochemistry could be my capstone. I really enjoyed the class not only for the topics discussed but also the freedom that the format of the class provided. This freedom made the class much more personal and made me feel as if I was not only a learner, but also a teacher.

A way to unravel the mind!

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This fall semester I decided to embark on an adventure through the mind by learning about different disorders and disease affecting our brain in the neurochemistry class at Concordia College. Prior to the first day of class, I thought the class was going to be very difficult and boring because of the overwhelming amount of biochemistry present in the subject. Also, I was concerned that I would be clueless about what was happening because I have had very limited exposure to diseases affecting the brain prior to this class. However, I was pleasantly surprised to learn that, although there is a lot of biochemistry, the class was one of the most satisfying classes I have taken at Concordia College and I recommend it to everyone.
What makes this such a great class? Well, I’m glad you asked. First, the class is set up differently than any other science class I have ever taken. Each week we attempt to tackle a new disease by investigating biological pathways which are disrupted as a result of the disease or disorder. Over the weekend we are assigned to read a research paper and write down questions that arise. In class on Monday’s background information about the paper is provided to help with our understanding of the disease or disorder. Additionally, questions are asked about the paper and these questions assigned to different members of the class to research and answer. On Wednesday, each member reports what they learned about their assigned question. Finally, during Friday’s class, the class is split up into groups and a discussion ensues about possible solutions to the disease or disorder. Honestly the Friday discussions are my favorite part because by the end of the week I feel I understand enough of the disorder and the research paper to adequately debate what is causing the disorder and if there is anything that can be done. Also I like our side-tracked discussions which tend to take place. After the discussion we write blogs about some aspect of what we learn through the course of the week and post it on the class blog page (the very site you are looking at).
Second, everyone can relate to at least to one or two of the disorders and diseases presented in the class. Although we did explore some conditions which few people in our class have been directly affected by, like bipolar disorder, most of the topics were familiar to everyone such as obesity, concussions, and alcohol consumption. This means people were more willing to research and debate the disorder or disease in class. So what I think makes this a great class is that I am encouraged to explore each topic as in-depth as I want and share what I have learned with others. I feel this is a more effective way of teaching than being told information and expected to memorize it for a test at the end of the class.
Finally, I would like to quickly say what I have learned as a result of taking this neurochemistry class. First, as I’m sure you have expected, I have learned a lot about the different types of diseases which we focused on in class. Prior to studying each disease I had little knowledge regarding of what the diseases were and how they worked in the body. However, now I view people with the disorders or diseases in a different way. Second, I feel more comfortable discussing hot button topics concerning the diseases and sharing information about the disease to others not in the class. Finally, I have learned how to present valuable information quickly and effectively as a result of our 3 minute time limit on Wednesday classes. This has helped me realize what information is important and which is not. Therefore, overall the neurochemistry course at Concordia College is an excellent way to learn of diseases and disorders seen daily in society and to see what is being done to help these people.
Source:
1) http://hplusmagazine.com/wp-content/uploads/brain1.jpg

What?! Why is autism on the rise?

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Autism is a developmental disorder characterized by impaired social interactions and communication and is normally diagnosed between the years of 2-4. However, the number of people diagnosed with autism has been on the rise in recent years. In a news story released by MSNBC on May 29th 2012 1in 88 children are diagnosed with autism up from 1 in 110 in 2007.2 So what are the possible reasons for the increase in autism?
As part of our investigation into autism this week we discussed possible reasons why autism could be on the rise. One of the possible reasons we mentioned in class is that environmental factors, like consumption of heavy metals and xenobiotics, are causing oxidative stress in the brain and are disrupting biological pathways as a result. In the paper this week researchers suspect the xenobiotics, which are any chemical found in an organism but would not be found in the organism naturally, and heavy metals are causing oxidative stress which is interfering with an enzyme named methionine synthase. The methionine synthase enzyme is responsible for methylating DNA and dopamine-stimulated phospholipids. As a result of fewer methylations, neuron networks are having problems synchronizing with one another and therefore causing problems with attention and cognition. The most likely sources for these heavy metals and xenobiotics are from pharmaceutical medications, food, and possibly from pesticides and herbicides.
Another possible reason why autism has increased in recent years is that doctors have gotten better at diagnosing children with autism. Unfortunately there are no biological or blood test to help identify children with autism. Instead, children are diagnosed by doctors who look for problems with communication, social interaction, and restricted and repetitive behaviors. Additionally, parents are commonly questioned about the child’s behavior to see if it is unusual. As a result of the observations and help from the parents, the doctors are able to determine if the child does or does not have autism.
Finally, vaccines have commonly been associated with the rise in autism in United States. Although there is evidence that vaccines given to children do not lead to autism this idea still persists in the United States. The main ingredient commonly connected with autism is thimerosal which used to be a preservative in vaccines. However, evidence from studies examining trend in autism and vaccine use do not support a connection between thimerosal and autism.3
Although there are several hypothesizes as to what could possibly be causing the increase in autism the true cause is still unknown. Personally, I think, like with most diseases, there is not a single biological problem resulting in autism. Instead I think the rise in autism is due to better diagnostic techniques and an increase in the biological stimuli which are responsible for causing autism. What these stimuli are I am unsure. One thing is for sure, autism will continue to rise until we can determine what is causing the increase in autism cases.
Sources:
1)http://www.google.com/imgres?q=autism&um=1&hl=en&sa=N&tbo=d&rlz=1T4ADFA_enUS342US343&biw=1366&bih=630&tbm=isch&tbnid=UuEBVHHE5g7FfM:&imgrefurl=http://www.asasb.org/&docid=6GvuTf0ItKFOjM&imgurl=http://www.asasb.org/wp-content/uploads/2010/11/AutismAwarenessRibbon-162×300.jpg&w=162&h=300&ei=FgzFUKvbGuXa2wWLwYHgDg&zoom=1&iact=hc&vpx=496&vpy=146&dur=979&hovh=240&hovw=129&tx=67&ty=136&sig=117327967081406772799&page=1&tbnh=155&tbnw=83&start=0&ndsp=22&ved=1t:429,r:3,s:0,i:161
2) http://www.msnbc.msn.com/id/46892046/ns/health-childrens_health/t/better-diagnosis-screening-behind-rise-autism/#.UMJZbqP4LSk
3) http://www.iom.edu/Reports/2004/Immunization-Safety-Review-Vaccines-and-Autism.aspx

B.R.E.W.ing with Neurochemistry

When I enrolled in neurochemistry, I had no idea what to expect from the course. I had no prior background in the subject matter besides an introductory biochemistry course. When coming into the course, I was expecting a normal lecture course where we would take notes, study, and eventually take a test on the material we learned. This was not the case for this course. In this course, we took a few weeks to study the basics of the brain covering basic receptors and signaling mechanisms. After we had this experience, we could finally get the full, unadulterated capstone experience.
From what I have learned from the various colleagues around the college, the capstone experience involves us taking a class in which we incorporate all of the material we have learned throughout our undergraduate career; a final hat on our learning experience. In neurochemistry, after our “basic training” session, we finally got to do this.
Each week we read through an article relating to a mental disorder such as Alzheimer’s disease, alcoholism, or even autism. We then took the time to study the pathways and their malfunctions in these diseases. Then, after we had read the article and discussed the “meat and potatoes” of the article, we had discussion every Friday morning about critical issues regarding the subject matter allowing us to apply our critical thinking skills we have learned throughout our undergraduate career. After these discussions, we would then compile our thoughts on the subject in a small, concise essay we would upload to a blog in which the world could read our thoughts.
Personally, I loved the way this class enveloped the capstone experience. We were able to back away from the stress of cramming for tests or writing a paper worth a significant portion of our grade and because of this, we were able to sit back, relax, and enjoy the material we were presented and relate it to critical issues that are faced throughout the world today. Neurochemistry also allowed us to use our previous education in chemistry and bring it all together in one class, which I believe is also a very important part of the capstone experience.
As well as encompassing the capstone experience, this course also embraced the colleges theme of B.R.E.W.; become responsibly engaged in the world. Along with our discussion of the science going along with the article, we also had very deep discussions regarding ethics of disease treatment and how we can apply our scientific knowledge to help the world. Because of this, we gained important experience in dealing with critical issues in the world and how we can approach them and “become responsibly engaged”.
All in all, I thought neurochemistry was a fantastic capstone course in chemistry. We were able to use the knowledge and skills we gained throughout our undergraduate career and apply it in sort of a “finale” course. By doing this, we also learned a bunch of new information about mental disorders that are very prevalent in the world today and how we as scientists are able to study them and treat or prevent them.  In my opinion, the issues discussed in this course really embraced what Concordia tries to instill into its students; being able to think critically about issues in their area of study. I will embrace what I have learned in this class and the skills I have taken away and become more responsibly engaged in the world.

Finding The Cause or Cure for Autism

The final discussion of the semester was on a topic that I care a lot about: autism. This past summer, I worked for my school districts out of school time child care program as a one on one teacher for special needs students. The girl that I worked most closely with was diagnosed with developmental delays but I also had a great deal of contact with a child diagnosed with autism. I loved working with these kids and this experience reinforced my desire to be a teacher.
 
Our paper this week focused mostly on the causes of autism, specifically on a possibly genetic link and environmental factors such as mercury and other xenobiotics. (Xenobiotics are anything in the body that is not supposed to be there. This includes vitamins and minerals that are normally found in the body but may be in larger than normal qualities.)  The problem with discussing the causes of autism is that there is not a common accepted cause.
 
You may be wondering, what is autism? Autism is a spectrum type disorder meaning it does not appear the same in each person. Diagnosis usually occurs by age three after parents seek help for children not meeting developmental milestones. Diagnosis is not done through a blood test but rather through interviews and observations with a psychologist. Diagnosis can be a very long process as it is hard to say that a child definitely had autism with just one visit. Autistic children may exhibit problems with social interaction such as making eye contact and general communication. They also have problems with pretend play and often prefer to spend time alone rather than interacting with other children. Children with autism also have many behavioral problems such as tantrums and aggression towards themselves or others. They often have very short attention span, very narrow interests and tend to get stuck on a specific topic or task. As you can imagine, having a child with autism can be very difficult to deal with. [
 
After learning many different hypothesis for various causes of autism and having the experience working with children in a school setting, it got me thinking. Is it more valuable to do research into what causes autism or into how we can treat it?
 
This is a difficult question for me to answer. On one hand, researching the cause of autism and understanding exactly what is going on in the brain of an autistic patient might help understanding how to treat it. On the other, I have first-hand experience working with autistic children and can honestly say it is difficult. Currently there are no medications available for treating autism as a whole. Rather many autistics take medication to manage the symptoms of the disorder such as irritability and anxiety. Problem is, many of the medications available to treat symptoms of autism are not approved for children. Most treatment for autism is behavioral management and therapy, which is teaching the child how to act and react appropriately.  Depending on where on the spectrum of autism the child falls however, behavioral therapy can be very difficult.
 
So to answer my question I am not sure which is more important. It is possible, and even likely, that both the cause and the solution will come from the same research but for now, as much support as possible needs to be given to families, schools and children to give autistic kids hope for the future.

A Recap on the Capstone Course

Enrolling in a class to fulfill two requirements seemed like a no-brainer, especially when it pertained to a subject I had little background on. Neurochemistry has helped integrate so many independent topics from classes. It is quite a novel experience to take biochemistry, psychology, and sociology topics and mix them together in a greater understanding of how they are related. The way we went about learning each topic was helpful as well, thought unlike any other course I’ve had at Concordia. The unique design of the class was probably its greatest strength in passing on integrating concepts effectively. Overall, I felt it was a useful class for those looking into life sciences and chemistry topics.
At the start of the semester, I had only a basic understanding of biochemical molecules and on neuronal processes. Action potentials and ion channels weren’t completely foreign and neither were most areas of the brain and their responsibilities. What were truly novel were the pathways and backgrounds of hormones. The first few weeks centered on chemical background, which were useful, but confusing at times. It would have been helpful to have more prerequisite classes or worksheets to fill out to spend more time on fundamentals, but we all definitely learned a lot about neurochemistry those first few weeks.
When we began to look at specific articles, all the background work began to apply to real diseases that we had all encountered at some point in our lives. The diseases ranged from obesity to autism to concussions. Sometimes it would seem almost shocking that so much research had been dedicated to each area, or that so many diseases could be attributed to chemical imbalances, up regulations, or down regulations. By far, the biggest struggle was getting a real grasp on every part of each paper. I’m no expert on neurochemistry, and I likely never will be, but the depth to each paper was beyond what I could get in just one single week, or reading over a weekend. I could attribute each disease to its root cause, its social aspects and influences, and some side facts. I’m not sure if there would have been a better route than shifting from overall review, individual topic discussions, then group discussions, but some were better understood than others. Easily, the group discussions led to the best understanding around the topic and social aspects. Personally, I feel I participated a decent amount, as did a few others, but some others were shyer and held back contributions. For those that have a lot to contribute, the discussions are extremely beneficial. Some diseases, like Parkinson’s, I knew almost nothing about but I could socially discuss its implications with those who had personally encountered it in their families, etc and really get a grasp for the diseases. Possibly switching the group discussions to Wednesdays and discussing individual things Fridays would help moving such a broad idea to smaller specific things would aid in article understanding. It’s a thought, but the group discussions truly solidified the main concepts even if we occasionally ventured off topic. They were my favorite part of the class, and its most unique feature. No other science course offers this linear route with such non-linear methods, such as discussions and personal opinions. I did not initially think that discussions would be something I’d like or helpful in learning processes, but they were the exact opposite and I could not be more pleased with how they’ve helped me tackle neurological diseases’ interworkings.

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